Changelog¶

Versions are of the form MAJOR.MINOR.PATCH and this changelog tries to conform to Common Changelog

unreleased¶

Changed¶

Configure repository to publish the docs to readthedocs
Port nextflow pipelines to DSL2 language. (#26) (Niklaus Johner)
Add CHANGELOG file. (#25) (Niklaus Johner)

Added¶

Add integration tests for pipelines and views. (#29) (Niklaus Johner)
Add unitesting for pipelines. (#26) (Niklaus Johner)
Add antimicrobial resistance annotations. (#23) (Niklaus Johner)

Fixed¶

Fix orthogroup comparison view navigation tabs. (#30) (Niklaus Johner)

1.2.1 - 2023-10-16¶

Changed¶

Bump checkm-genome version to 1.2.2. (Trestan Pillonel)

1.2.0 - 2023-10-13¶

Changed¶

Use mamba to build conda envs (30bbb7530d75c3adf986aaf4c5052ad83ea301b8) (Trestan Pillonel)

Fixed¶

Fix issue for genome file download (#16) (Trestan Pillonel)
Fix file extensions in annotation pipeline (#17) (Thomas Kozusnik)

1.1.1 - 2023-05-16¶

Fixed¶

Fixed several issues with conda environments. (Bastian Marquis and Trestan Pillonel)

1.1.0 - 2023-03-30¶

Added¶

Add --resume option to zdb setup (272b4b434279d725b5860db26458c430934fddd5) (Bastian Marquis)

1.0.8 - 2023-03-15¶

Added¶

Add support for docker and conda. (#13) (Bastian Marquis)

Fixed¶

Several bugfixes

1.0.5 - 2022-12-08¶

Added¶

Add --resume option to zdb run (#11) (Bastian Marquis)
Add name field to the input csv file.
Accept genbank files with other extensions in the pipeline.

1.0.4 - 2022-09-21¶

Fixed¶

Fix conda build (#10) (Bastian Marquis)

1.0.3 - 2022-06-07¶

Fixed¶

Correctly set number of missing orthogroups. (b9df07c2668f4d70cea2a345a7b3fdf2f6d55bfb) (Bastian Marquis)
Fix bug with singularity. (4d37463ed78789f26352c56d1c2af9c50e2b09b9) (Bastian Marquis)

1.0.2 - 2022-05-10¶

Added¶

Add support for conda. (#9) (Bastian Marquis)

1.0.0 - 2022-04-01¶

Initial release.